Bioinformatics

Ashouri M*, Shmuel G, Chen CH, and Phoa KH (2023), An interactive clustering-based visualization tool for air quality data analysis, Aerosol and Air Quality Research, 23(12), October 1, doi: 10.4209/aaqr.230124
Chen Y, Koch T*, Zakiyeva N, Liu KL, Xu ZT, Chen CH, Nakano J, and Honda K (2023), Article’s scientific prestige: Measuring the impact of individual articles in the Web of Science, Journal of Informetrics, 17(1), 101379
Huang HL, Huang YJ, Chu YC, Chen CW, Yang HC, Hwang JS, Chen CH, and Chan TC* (2023), Exploring factors underlying poorly-controlled asthma in adults by integrating phenotypes and genotypes associated with obesity and asthma: A case-control study, Journal of Asthma and Allergy, 2023 Jan 21;16:135-147. doi: 10.2147/JAA.S397067
Kuo YH, Chou CK, Fujiwara T, Chen CH, and Ma KL (2022), Visual analytics of air pollution data with machine-learning-aided analysis workflows, The 15th IEEE Pacific Visualization Symposium (PacificVis 2022), doi: 10.1109/PacificVis53943.2022.00018
Chatla SB*, Chen CH, and Shmuéli G* (2017), Selected topics in statistical computing, Encyclopedia with Semantic Computing and Robotic Intelligence, Vol. 1, No. 1, World Scientific Publishing Company
Huang CC, Tien YJ, Chen MJ*, Chen CH, Ho HN, and Yang YS (2015), Symptom patterns and phenotypic subgrouping of women with polycystic ovary syndrome: Association between endocrine characteristics and metabolic aberrations, Human Reproduction, 30(4), 937–946
Yang HC*, Wang PL, Lin CW, Chen CH, and Chen CH (2012), Integrative analysis of single nucleotide polymorphisms and gene expression efficiently distinguishes samples from closely related ethnic populations, BMC Genomics, 13:346
Chang CT, Tsai CN, Tang CY, Chen CH, Lian JH, Hu CY, Tsai CL, Chao A, Lai CH, Wang TH*, and Lee YS (2012), Mixed Sequence Reader (MSR): A program for analyzing DNA sequences with heterozygous base calling, The Scientific World Journal, Volume 2012, Article ID 365104, 10 pages doi:10.1100/2012/365104
Tsai CA*, Huang CH, Chang CW, and Chen CH (2012), Recursive feature selection with significant variables of support vectors, Computational and Mathematical Methods in Medicine, Volume 2012, Article ID 712542, 12 pages
Shaw GTW, Shih ESC, Chen CH, and Hwang MJ* (2011), Preservation of ranking order in the expression of human housekeeping genes, PLoS ONE, 6(12):e29314, doi: 10.1371/journal.pone.0029314
Lee YS, Cha A, Chen CH, Chou T, Wan SMM, and Wang TH* (2011), Analysis of human meiotic recombination events with a parent-sibling tracing approach, BMC Genomics, 12:434
Yang HC*, Chang LC, Huggins RM, Chen CH, and Mullighan CG (2011), LOHAS: Loss-of-heterozygosity analysis suite, Genetic Epidemiology, 35(4), 247–260
Yang HC*, Lin HC, Kang M, Chen CH, Lin CW, Li LH, Wu JY, Chen YT, and Pan WH (2011), SAQC: SNP array quality control, BMC Bioinformatics, 12:100
Ho MR, Tsai KW, Chen CH, and Lin WC* (2011), dbDNV: A resource of duplicated-gene nucleotide variants in the human genome, Nucleic Acids Research, 39, Database Issue
Zou W, Lin WJ, Foley SL, Chen CH, Nayak R, and Chen JJ* (2010), Evaluation of pulsed-field gel electrophoresis profiles for the identification of Salmonella serotypes, Journal of Clinical Microbiology, 48(9), 3122–3126
Ho MR, Chen CH, and Lin WC* (2010), Gene-oriented ortholog database: A functional comparison platform for orthologous loci, Database: The Journal of Biological Databases and Curation, 2010:baq002
Lee YS, Chen CH, Tsai CN, Chao A*, and Wang TH* (2009), Microarray labeling extension values: Laboratory signatures for Affymetrix GeneChips, Nucleic Acids Research, 37(8):e61
Lee YS, Chao A, Chao AS, Chang SD, Chen CH, Wu WM, Wang TH*, and Wang HS (2008), CGcgh: A tool for molecular karyotyping using DNA microarray-based comparative genomic hybridization, Journal of Biomedical Science, 15(6), 687–696
Wu TT, Sun W, Yuan SS, Chen CH, and Li KC* (2008), A method for analyzing censored survival phenotype with gene expression data, BMC Bioinformatics, 9:417
Ho MR, Jang WJ, Chen CH, Ch’ang LY, and Lin WC* (2008), Designating eukaryotic orthology via transcription units, Nucleic Acids Research, 36(10), 3436–3442
Chou CC, Hsiao HY, Hong QS, Chen CH, Peng YW, Chen HW, and Yan PC* (2008), Single-walled carbon nanotubes can induce pulmonary injury in a mouse model, Nano Letters, 8(2), 437–445
Chen JJ, Tsai CA, Tzeng SL, and Chen CH* (2007), Gene selection with multiple ordering criteria, BMC Bioinformatics, 8:74
Pan WH*, Chang YP, Yeh NH, Chen CH, and Tzeng SL (2006), Evaluating the DOH food guide based on Taiwanese food choices, Nutritional Sciences Journal, 30(3), 116–126
Chen JJ*, Tsai CA, Moon H, Ahn H, and Chen CH (2006), Decision threshold adjustment in class prediction, SAR and QSAR in Environmental Research, 17(3), 337–352
Pan WH*, Lynn KS, Chen CH, Wu YL, Lin CY, and Chang HY (2006), Using endophenotypes for pathway clusters to map complex disease genes, Genetic Epidemiology, 30(2), 143–154
Tsai CA, Lee TC, Ho IC, Yang UC, Chen CH, and Chen JJ* (2005), Multi-class clustering and prediction in the analysis of microarray data, Mathematical Biosciences, 193(1), 79–100
Chen CH, and Li KC (2004), A three-way classification strategy for reducing class-abundance: The zip code recognition example, I.M.S. Lecture Notes–Monograph Series, 44, 63–86
Tsai CA, Chen CH, Lee TC, Ho IC, Yang UC, and Chen JJ (2004), Gene selection for sample classifications in microarray experiments, DNA and Cell Biology, 23, 607–614
Chou CC, Chen CH, Lee TT, and Peck K* (2004), Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression, Nucleic Acids Research, 32(12)
Li KC, Lue HH, and Chen CH (2000), Interactive tree-structured regression via principal Hessian directions, Journal of the American Statistical Association, 95, 547–560
Li KC, Wang JL, and Chen CH (1999), Dimension reduction for censored regression data, Annals of Statistics, 27, 1–23