Features:
-
Clustering Analysis: hierarchical clustering, rank-two ellipse
seriation
-
Various Display Conditions
-
Histogram, 2D Scatterplot, 3D Scatterplot (Rotatable)
-
Covariate adjustment MV.
-
Data
ordering comparison.
¡@
Downloads
-
MS Windows (XP, 2000, 7) Version
- MS Windows 7 (64bit) Version:
coming soon.
- Mac Version: coming soon.
- Linux Version: coming soon.
- Note:
- Using
larger memory: For example (in the DOS console
window): java -Xms1024m -Xmx2048m GAPSoftware.jar
¡@
- Upgrade: please uninstall the previous
version and install the current version.
¡@
Documentation
Tutorial
- 2006/12/22,
Toturial
on GAP
The Institute of Statistical
Mathematics, Tokyo, Japan
- 2006/05/18,
Toturial
on GAP
TIGP seminar, Taipei, Taiwan
- 2006/02/12,
Toturial
on GAP
The Fourth Asia
Pacific Bioinformatics Conference (APBC2006)
13-16 Feb, 2006, Taipei, Taiwan
- 2005/12/15,
Workshop on GAP
IASC-ARS 2005, The
5th Asian Conference on Statistical Computing
Hong Kong, Dec. 15-17, 2005
Citing GAP
To cite GAP in your
publications, please use some of the following articles:
- Chen, C. H. (2002).
Generalized Association Plots: Information Visualization via
Iteratively Generated Correlation Matrices. Statistica Sinica
12, 7-29.
- Wu, H. M., Tien, Y. J. and Chen, C. H.* (2010).
GAP: A Graphical Environment for
Matrix Visualization and Cluster Analysis, Computational
Statistics and Data Analysis, 54, 767-778.
- Han-Ming Wu et al., (2010), Covariate-adjusted matrix
visualization via correlation decomposition, manuscript. [Supplementary
information]
Copyright
This package and its contents are Copyright ?2005-2008 Lab for
Information Visualization, All Rights Reserved.
License
Use of this software you indicates your acceptance of this
license agreement and warranty.
Articles Using/Citing GAP Software
Articles citing GAP are listed in our web site.
- Lin, S.H., Liu, C.M., Liu, Y.L., Fann, C. S.J., Hsiao, P.C., Wu,
J.Y., Hung, S.I., Chen, C.H., Wu, H.M., Jou, Y.S., Liu, S.K., Hwang,
T.J., Hsieh, M.H., Chang, C.C., Yang, W.C., Lin, J.J., Chou, F.H.C.,
Faraone, S.V., Tsuang, M.T., Hwu, H.G. and Chen, W.J. (2009),
Clustering by Neurocognition for Fine Mapping of the Schizophrenia
Susceptibility Loci on Chromosome 6p. Genes, Brain and Behavior
8(8):785-794.
- Tien, Y. J., Lee, Y. S, Wu, H. M. and Chen, C. H.* (2008),
Methods for Simultaneously Identifying Coherent Local Clusters with
Smooth Global Patterns in Gene Expression Profiles. BMC
Bioinformatics 9:155, 1-16.
- Fielding, A.H., 2007. Cluster and Classification Techniques for
the Biosciences, Cambridge University Press; 1 edition.
- Lee, Y.S., Chen, C.H., Chao, A., Chen, E.S., Wei, M.L., Chen,
L.K., Yang, K., Lin, M.C., Wang, Y.H., Liu, J.W., Eng, H.L., Chiang,
P.C., Wu, T.S., Tsao, K.C., Huang, C.G., Tien, Y.J., Wang, T.H.,
Wang, H.S., Lee, Y.S., 2005. Molecular signature of clinical
severity in recovering patients with severe acute respiratory
syndrome
coronavirus (SARS-CoV). BMC Genomics 6:132.
Please let us know if we are missing your publications. If you
have used GAP in a publication, we would love to learn more about
how the software was useful to you. Contact us at:
hmwu@mail.tku.edu.tw.
FAQ
Frequently asked questions.
Bug Reports/Fixed
Bug reports and fixed.
see
[GAP Forum]
GAP
Forum
Generalized Association Plots (GAP) Forum: Please register
in the GAP Forum, so that you can download the software and post
questions.
Thanks
Some Java Tools and the Numerical/Statistical/Graphics
Library I Used in Developing GAP Software:
Send Your Comments
to Han-Ming Wu (Hank),
hmwu@mail.tku.edu.tw
Latest Updated：2012/05/15
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